PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75259.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 235aa MW: 26056.5 Da PI: 7.6617

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	19	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+k+l ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++k OWM75259.1 19 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKMLLHIPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQLMQVK 117 7***********************99*****************************************************************9999 PP DUF260 99 ee 100 ++ OWM75259.1 118 AQ 119 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MAPPGNSNTG SGTGQTGSPC GACKFLRRKC AADCIFAPYF CSEQGPARFA AIHKVFGASN 60 VSKMLLHIPV PDRCEAVVTI AYEAQARIRD PVYGCVAHIF ALQQQVAYLQ AQLMQVKAQM 120 AHNLMTDARN TQNQQLWTSG NNNICGSLNQ SLMFPVDNRT TSYINSSNNI SPQSSIESVD 180 HSIEAFRMQE IESRDHHQHQ QELCCMSFPQ QFSEKRPPNC DLGELQAVAL RMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	1e-49	LBD family protein