PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75480.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 395aa MW: 43753.8 Da PI: 7.6538

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl OWM75480.1 14 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.7	7.2e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ OWM75480.1 67 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG 120 IDPATHKPLS EVENGNDKDN KSSKAQEKAH SSKPNSAVTE QRSSLSPPQA FQMKQEDDAA 180 MASNGSSAFS RDYYSEESFN PLQALGSYAP NTQVPSCSAI SSPSIWLAQM GKSFGMNSEL 240 NLDTNLIPSI LPQSTSSYLS SPVGFRPSAT VLTESLPLKS FPLDETRLWD PSNASSSSNN 300 SNGSFIESGI FSWGLADCSA SDKESSNSVC LMESQNQTGE VKWADYFPNS SLLMAAANFQ 360 NPTPQSLYNE IKSDVSHFIA SSSSSFLWPQ QNQLC

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG  120
IDPATHKPLS EVENGNDKDN KSSKAQEKAH SSKPNSAVTE QRSSLSPPQA FQMKQEDDAA  180
MASNGSSAFS RDYYSEESFN PLQALGSYAP NTQVPSCSAI SSPSIWLAQM GKSFGMNSEL  240
NLDTNLIPSI LPQSTSSYLS SPVGFRPSAT VLTESLPLKS FPLDETRLWD PSNASSSSNN  300
SNGSFIESGI FSWGLADCSA SDKESSNSVC LMESQNQTGE VKWADYFPNS SLLMAAANFQ  360
NPTPQSLYNE IKSDVSHFIA SSSSSFLWPQ QNQLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	4e-95	MYB family protein