PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75621.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 269aa MW: 31050.7 Da PI: 6.7848

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75621.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.4e-16	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++ g+ R +k+c++rw +yl OWM75621.1 5 KGLWSPEEDQRLRDYILKYGHGCWSSVPINAGLQRNGKSCRLRWINYL 52 678*******************************************97 PP
2	Myb_DNA-binding	46.6	7.6e-15	58	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T E+e ++++++ lG++ W+ Ia++++ gRt++++k+ w++yl OWM75621.1 58 RGMFTVHEEETILNLHRTLGNK-WSQIAQHLP-GRTDNEIKNCWHSYL 103 788*****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MKHRKGLWSP EEDQRLRDYI LKYGHGCWSS VPINAGLQRN GKSCRLRWIN YLRPGLKRGM 60 FTVHEEETIL NLHRTLGNKW SQIAQHLPGR TDNEIKNCWH SYLKKRVAKP EPVEPYMKSE 120 CKSDATDSLS FQETKHKSSS NRPTDVSSLP QGIVFAEWLT LDNNTNESGH EGSFSDYYPH 180 YGDGDLMRMA CAESTDCSAN LLQDSLLQNV ILRDVDNGAF RGGDLIDEYS NYRKMEEQRS 240 QSGLLLNFPS RDYMFSSNEY TMNSDLMYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	6e-60	MYB family protein