PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM75634.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 769aa    MW: 84527.7 Da    PI: 5.2902
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM75634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-2072127156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++k +++t++q++ Le++F+++++p++++r eL+++lgL+ +q+k+WFqNrR++ k
  OWM75634.1  72 KKKYHRHTPQQIQLLESFFKECPHPDEKQRNELSRRLGLESKQIKFWFQNRRTQLK 127
                 79999***********************************************9987 PP
2START159.23.3e-502845071205
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela + ++el+k+a+++ p+W +s     e +n +e++++f++  +     +  e +r+++++  ++   ve+l+d+  +W et+     +a++++vis
  OWM75634.1 284 ELAVCSMNELIKMAEVNTPLWARSFdgarEVLNHEEYMRIFSPHCGskprnFVPEGSRETAILLINSLAAVEILMDVD-RWAETFLcmiaRASIIDVIS 381
                 578999*******************9999************997779999888999************9*********.*******99*********** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                  g      galqlm aelq+lsplvp R + f+R+++q+ +g w+++d+Svd   +  e   ++ +++lpSg+++++++ng +kvtw+eh ++++ l++
  OWM75634.1 382 GGisgnrnGALQLMEAELQVLSPLVPvRRVKFLRFCKQHAEGIWAVADISVDLFPDTIEGFAFANCRRLPSGCILQDMPNGCCKVTWIEHSEYDEGLIP 480
                 ****************************************************877766699************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqce 205
                  l+rs+++sgl +ga++wvatlqrqce
  OWM75634.1 481 DLYRSFLRSGLGFGAQRWVATLQRQCE 507
                 **************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    
MDGLHGAGDN NNFMGLFGGV NNFEADFMAQ LKEEGYESHE GSENFDAGSG DEVDVEVELV  60
EGDGQQDQPP KKKKYHRHTP QQIQLLESFF KECPHPDEKQ RNELSRRLGL ESKQIKFWFQ  120
NRRTQLKTQM ERHENAMLRE DNTRLRNENH AMRTKLNRPI CNTCGGPAVL NGSRMTPEEQ  180
QLKLENARLK DELTRICVLS NKFLGRPISP FARSIMASAA PPPPPAPSSG LENVGIPVRV  240
AGPSSLGFPD GFSIAPPVDP MTKPIRGAAE GGNEALHEKS MFLELAVCSM NELIKMAEVN  300
TPLWARSFDG AREVLNHEEY MRIFSPHCGS KPRNFVPEGS RETAILLINS LAAVEILMDV  360
DRWAETFLCM IARASIIDVI SGGISGNRNG ALQLMEAELQ VLSPLVPVRR VKFLRFCKQH  420
AEGIWAVADI SVDLFPDTIE GFAFANCRRL PSGCILQDMP NGCCKVTWIE HSEYDEGLIP  480
DLYRSFLRSG LGFGAQRWVA TLQRQCEFLT MLMPSANPGE EPSGINLSGR RSMLKLAQRM  540
VDNFCSGVCT SMVGDWEMLY AGNIGQDIRV MTRNSLNNPG LPPGILLSAS TSVWMPVSHE  600
VLFNFLRDER VRSEWDILSR GGLMQEAVHI AKGQSRENCV SLLRANPVGE NATGMLILQE  660
TWSDASGSLV VYAPVDVQSI NLVMGSEDSS FVALLPSGFV ILPDACDPLG TGNVLINGGS  720
ICAGSLLTVG FQILVNSVPM AKLNAESVET VNGLIACTVQ KIKAALQLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein