PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM75651.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25429 Da    PI: 8.5878
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM75651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.8e-301059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien   rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye++s
  OWM75651.1 10 RIENAASRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFAS 59
                8***********************************************86 PP
2K-box64.53.9e-22851721299
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +  +l++e a ++++ie L+ +qR+llG++L+s+s++eL+++ +qLe+sl+++R++K +l+ eq ++l  kek l een +L +k  
  OWM75651.1  85 CQVLHLKHETAEMERKIEILEVSQRKLLGQGLGSCSMEELHEMDSQLERSLSSVRARKAQLFNEQKRQLEAKEKLLLEENARLLAKCS 172
                 5567899****************************************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MVRGKIQMRR IENAASRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFASS  60
DIRETIERYS RYAKDVQTYK SDMECQVLHL KHETAEMERK IEILEVSQRK LLGQGLGSCS  120
MEELHEMDSQ LERSLSSVRA RKAQLFNEQK RQLEAKEKLL LEENARLLAK CSENHWETRS  180
ASQERGAIYQ LSSNGPYGLD VETELFIGLP EMRYSKQQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-73MIKC_MADS family protein