PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75653.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 221aa MW: 25838.4 Da PI: 9.457

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.7	1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye++s OWM75653.1 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFAS 59 79***********************************************86 PP
2	K-box	65.8	1.5e-22	84	172	11	99
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e + +l++e a ++++ie L+ +qR+llG++L+s+s++eL+++ +qLe+sl+++R++K +l+ eq ++l kek l een +L++k OWM75653.1 84 EYQVLHLKHETAEMERKIEILEVSQRKLLGQGLGSCSMEELHEMDSQLERSLSSVRARKAQLFNEQKRQLEAKEKLLLEENARLHAKCS 172 45566899*****************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFASS 60 DIRETIERYS RYAKDVQTYK RDMEYQVLHL KHETAEMERK IEILEVSQRK LLGQGLGSCS 120 MEELHEMDSQ LERSLSSVRA RKAQLFNEQK RQLEAKEKLL LEENARLHAK CSENHRETRS 180 ASQERGAIYR LSSNGPYGLD VETELFIGLP EMRYSKQQQQ Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	1e-74	MIKC_MADS family protein