PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM75772.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 256aa    MW: 28217.1 Da    PI: 8.8093
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM75772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.81.6e-282101195
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a +e+ r+++++sl+yeA+ r+ +P+yG+vg+++++++  ++++++ 
  OWM75772.1   2 SCNGCRVLRKGCSDDCAIRPCLqwissPDSQANATMFLAKFYGRAGLVNLISAGSEHVRPAIFRSLLYEACGRIINPIYGSVGLFWSGNWSQCHSAVNS 100
                 6******************************************************************************************99988766 PP

      DUF260  95 a 95 
                 +
  OWM75772.1 101 V 101
                 5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MSCNGCRVLR KGCSDDCAIR PCLQWISSPD SQANATMFLA KFYGRAGLVN LISAGSEHVR  60
PAIFRSLLYE ACGRIINPIY GSVGLFWSGN WSQCHSAVNS VLKGSTHFMR HVTLINSAQP  120
FPALKTYDIR HNHRATSPAT SYDIHKVRTS RPRFKQSILR PTESKPASSQ WLYDPTSCDS  180
IQASRLGPKR DSLEGIDSLL FAETVEAFLV SRSGPDRVLR FDGPKSSTEN HVVKLDLTLG  240
IGAHADACMA ELADHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-67LBD family protein