PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75876.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 158aa MW: 18285.1 Da PI: 10.3786

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.1	5.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqv+f+kR+ g+lKKA+ELSvLCd+eva i+fss+gklye+ss OWM75876.1 9 KRIENKINRQVSFAKRKSGLLKKAFELSVLCDVEVAAILFSSRGKLYEFSS 59 79***********************************************96 PP
2	K-box	89.6	5.8e-30	78	157	4	83
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++++++ +++s +qe+ kLk ++e Lqr+qR+llGedL+++s+keL+qLe++++kslk+iRs+K +++l+q+ +lqkk OWM75876.1 78 AESSQVTMDHMQSTYQEYVKLKTRVEALQRTQRNLLGEDLGQMSIKELEQLEHKMDKSLKHIRSTKIQHMLNQVADLQKK 157 5566688999*********************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MGRGKVELKR IENKINRQVS FAKRKSGLLK KAFELSVLCD VEVAAILFSS RGKLYEFSSS 60 SSMASTIERY HRYTFANAES SQVTMDHMQS TYQEYVKLKT RVEALQRTQR NLLGEDLGQM 120 SIKELEQLEH KMDKSLKHIR STKIQHMLNQ VADLQKKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	6e-71	MIKC_MADS family protein