PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75932.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 358aa MW: 39760.2 Da PI: 9.6358

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75932.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	88	133	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ OWM75932.1 88 RGHWRPAEDMKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 133 899***************************.*********996 PP
2	Myb_DNA-binding	56.3	7.2e-18	140	183	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ OWM75932.1 140 RRAFTEEEEERLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 183 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MTSNGSLSSA SSSSSSSREG LGLGADMGLG SLSLSPKIRD RAEAIGGFWG FRCAKSGAGQ 60 QQEEQQRSPA ASEQSNGQSG NSSKLCARGH WRPAEDMKLK ELVALYGPQN WNLIAEKLEG 120 RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRVYGN KWAMIARLFP GRTDNAVKNH 180 WHVIMARKYR EQSSAYRRRK LSQSIVYRRS DQGGSNNPNV NNQVQGFVLC RDYSFPHSSS 240 STAVRAEPAA FPTIPYFFDS QSGGIIGSLS QLSFGDQFNG YGSFNHMMMN NGIEEEGPKC 300 NNEMLSTFSR TRSRDQPAYD PHRMVQDPYQ HSISTASISP QAEASSPKFI DFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MTSNGSLSSA SSSSSSSREG LGLGADMGLG SLSLSPKIRD RAEAIGGFWG FRCAKSGAGQ  60
QQEEQQRSPA ASEQSNGQSG NSSKLCARGH WRPAEDMKLK ELVALYGPQN WNLIAEKLEG  120
RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRVYGN KWAMIARLFP GRTDNAVKNH  180
WHVIMARKYR EQSSAYRRRK LSQSIVYRRS DQGGSNNPNV NNQVQGFVLC RDYSFPHSSS  240
STAVRAEPAA FPTIPYFFDS QSGGIIGSLS QLSFGDQFNG YGSFNHMMMN NGIEEEGPKC  300
NNEMLSTFSR TRSRDQPAYD PHRMVQDPYQ HSISTASISP QAEASSPKFI DFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26780.1	3e-77	MYB family protein