PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM76223.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 170aa MW: 19209.1 Da PI: 10.0798

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM76223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78	6.8e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ks+r vtfskRr g++KKA+ LSvLCd+++a+++fss+gkly +ss OWM76223.1 9 KQIEDKSKRLVTFSKRRSGLIKKANQLSVLCDVDIALLVFSSSGKLYKFSS 59 78***********************************************96 PP
2	K-box	29.6	3e-11	77	133	27	82
K-box 27 eienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 e e+L+ ++ + G ++ L +++L+qLe+qL+++l k+RskK++ +eq +l k OWM76223.1 77 EAEELEaVKITEVGGPAIDLLGVNDLMQLEKQLHSALDKVRSKKERDQKEQHGQLNK 133 55666655667888999***************************9988888777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MGRKKLAMKQ IEDKSKRLVT FSKRRSGLIK KANQLSVLCD VDIALLVFSS SGKLYKFSSS 60 PDSLINLVKH YRNQLGEAEE LEAVKITEVG GPAIDLLGVN DLMQLEKQLH SALDKVRSKK 120 ERDQKEQHGQ LNKEIAVLVS NDDRFKGFRR DLNVPIDGDR GEATPHLLQW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.2	1e-20	MIKC_MADS family protein