PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM76224.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 199aa MW: 22765 Da PI: 9.576

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM76224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.7	8.2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ snrqvtfskRrng++KKA ELSvLCd++va+++fsstgklye++s OWM76224.1 9 KRIEDRSNRQVTFSKRRNGLIKKARELSVLCDVDVALLVFSSTGKLYEFCS 59 79***********************************************96 PP
2	K-box	39.7	2.1e-14	99	169	26	98
K-box 26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +e Lq q h+ G d+e+L++ +L qLe+qL+ ++++ R +K +l+ ++ k +el++en+ L++++ OWM76224.1 99 SHMELLQLAQSHMGGMDIEQLNMVDLVQLEKQLDAAMTQTRFRKIQLMEQSATPFYK--QELRQENRLLEEQV 169 67899*******************************************999887766..56888888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MGRRKLEMKR IEDRSNRQVT FSKRRNGLIK KARELSVLCD VDVALLVFSS TGKLYEFCSS 60 GSSLANILER YRKHLEEADA SDAITNPRNC SLGDAWQRSH MELLQLAQSH MGGMDIEQLN 120 MVDLVQLEKQ LDAAMTQTRF RKIQLMEQSA TPFYKQELRQ ENRLLEEQVN SLASGSGRGS 180 VSGQHQPHQL ATLRWMNKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.2	2e-43	MIKC_MADS family protein