PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM76225.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27724.7 Da PI: 8.8122

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM76225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s OWM76225.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	93.4	3.8e-31	89	176	13	100
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + s+qqe+ kLk+++e Lq++qR+llGe+L++Ls keL++Le+qL+ slk+iRs++++++l+q++elq+ke +l+e+n+aL+++l+e OWM76225.1 89 LELSSQQEYLKLKARYEALQKTQRNLLGEELGPLSSKELESLERQLDASLKQIRSTRTQYMLDQLSELQRKEYMLNEANRALKQRLME 176 45589*******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS 60 SSVLKTLERY QKCSYNAMEP TVSAKEASLE LSSQQEYLKL KARYEALQKT QRNLLGEELG 120 PLSSKELESL ERQLDASLKQ IRSTRTQYML DQLSELQRKE YMLNEANRAL KQRLMEGYQA 180 ANLLQLNPAA DHEVGYGRQG APPQPDGLFH QLDCEPTLHI GYQPDPVAAV TAGPSANNFM 240 PGWLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-115	MIKC_MADS family protein