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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OWM76409.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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| Family | GeBP | ||||||||
| Protein Properties | Length: 238aa MW: 27060.7 Da PI: 11.1795 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 57.9 | 2.9e-18 | 76 | 164 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
fqr+wse e+ +++Gl++ ++ +p +++++ye +k++i + v+k+ l+ Ki +LKkKfk + kk+k+g e ++++++ + l+ k Wg
OWM76409.1 76 FQRIWSEPEEMEVMKGLVEVSKN---KPEYELNDIYECIKQKIPSSVTKRRLSGKIWNLKKKFKSCDKKVKQGAE---LSPQEENFLVLAVKAWG 164
9******************9544...46889**************************************999998...56778889999999997 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 238 aa Download sequence |
MIRPLPLQKK IKRKTKKKKR KRIKRKNRRN NNSSLQALRP TERKKRSAEG IVSNGEAASK 60 RVKTKSNSKA QKKQFFQRIW SEPEEMEVMK GLVEVSKNKP EYELNDIYEC IKQKIPSSVT 120 KRRLSGKIWN LKKKFKSCDK KVKQGAELSP QEENFLVLAV KAWGSVENLV KGRIAAKKPV 180 KGKTAAARGL EGHEGTSVSA LSRRLLKGIE DVGGGWSLNE EFNAKNLKVL NLKEAENL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 8 | 26 | QKKIKRKTKKKKRKRIKRK |
| 2 | 9 | 17 | KKIKRKTKK |
| 3 | 12 | 26 | KRKTKKKKRKRIKRK |
| 4 | 13 | 21 | KKIKRKTKK |
| 5 | 16 | 21 | KKKKRK |
| 6 | 16 | 22 | KKKKRKR |
| 7 | 17 | 25 | KKIKRKTKK |
| 8 | 18 | 25 | KKRKRIKR |
| 9 | 21 | 29 | KKIKRKTKK |
| 10 | 24 | 46 | KRKNRRNNNSSLQALRPTERKKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G11510.1 | 5e-09 | GeBP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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