PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77200.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 445aa MW: 49404.1 Da PI: 5.9891

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.2e-09	17	37	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ GtC yG+rC+F H+ OWM77200.1 17 VCSYYQK-GTCTYGSRCRFEHV 37 7****.*********997 PP
2	zf-CCCH	18	5.3e-06	169	188	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ a+ G C+ G++C+++Hg OWM77200.1 169 CS-LAAEGNCPNGENCPYIHG 188 55.7888*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MFSLIDDDVN LRTESDVCSY YQKGTCTYGS RCRFEHVKST GSWHPASSSS ASFQSKDADA 60 APSHDLFSKN TSGGVNVNYC VLGDSSSKKT SVPCRLWHGA SSSSAALQTK VSGSVPQPLS 120 TKSALGRLNL SSAQVSASKR PLGSERCDYI DGGDLADTKA ERPGNCSICS LAAEGNCPNG 180 ENCPYIHGDL CSTCGKHCLH PSSPQERDEH AKACEEKQKQ LEAMKLSEEI ECSICFDRIL 240 LKPPAERKFG ILSECDHPFC ITCIRNWRRS SPASGMDVNS ASRSCPICRK LSYFVVPSDI 300 WYTTKEEKER IISNYKARLK LIDCKHFNFG NGNCPFGSSC FYKHTVKPGS YTWIHHRPPP 360 PRRRNRVNMS SMFDAFEQLW SLDDLIGGGE YDDEDDMDYY DLNYLIDPVD FGFDSNDLSD 420 LSRVEMALLL HQLGLDHSDP SSDEE

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MFSLIDDDVN LRTESDVCSY YQKGTCTYGS RCRFEHVKST GSWHPASSSS ASFQSKDADA  60
APSHDLFSKN TSGGVNVNYC VLGDSSSKKT SVPCRLWHGA SSSSAALQTK VSGSVPQPLS  120
TKSALGRLNL SSAQVSASKR PLGSERCDYI DGGDLADTKA ERPGNCSICS LAAEGNCPNG  180
ENCPYIHGDL CSTCGKHCLH PSSPQERDEH AKACEEKQKQ LEAMKLSEEI ECSICFDRIL  240
LKPPAERKFG ILSECDHPFC ITCIRNWRRS SPASGMDVNS ASRSCPICRK LSYFVVPSDI  300
WYTTKEEKER IISNYKARLK LIDCKHFNFG NGNCPFGSSC FYKHTVKPGS YTWIHHRPPP  360
PRRRNRVNMS SMFDAFEQLW SLDDLIGGGE YDDEDDMDYY DLNYLIDPVD FGFDSNDLSD  420
LSRVEMALLL HQLGLDHSDP SSDEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	7e-96	C3H family protein