PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77219.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 32869.6 Da PI: 6.9391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.2e-18	149	203	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OWM77219.1 149 TKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 203 677889***********************************************98 PP
2	HD-ZIP_I/II	128.2	3.5e-41	150	239	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk OWM77219.1 150 KKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLHKELQELR-ALK 239 9*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MELGLRLGEA SSKPSDSTNK IIELFKGRSS NSCPSDGGED TEEEGDDDHR HNRLEMISLN 60 SAMAQDEEDN DLKPSGSMDP PVQLDLLPHT PVVPHKGGSS GAGSSSGSSL NSGGSSFQMD 120 LGINNRHEKK TSSSRASDNE GDQSGSSRTK KLRLSKEQSA FLEESFKEHH TLNPKQKLAL 180 AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKKCCET LTEENRRLHK ELQELRALKS 240 TSSPFYMQLP ATTLTMCPSC ERVSSASAAA SSVAATSKAI EPPPFSKAAT GLFFLDKPTQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	206	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-61	HD-ZIP family protein