PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77289.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 307aa    MW: 34847.7 Da    PI: 7.4638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151359147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEde+l  ++k +G g+W+  +++ g++R++k+c++rw++ 
       OWM77289.1 13 RGAWSAEEDEILTYYIKSHGEGQWRDLPQRAGLKRCGKSCRLRWLNC 59
                     89******************************************996 PP
2Myb_DNA-binding53.45.9e-1766110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE+el+++ +k+lG++ W++Ia++++ gRt++++k++w++ 
       OWM77289.1  66 RGNISEEEEELILRMHKLLGNR-WALIAARLP-GRTDNEIKNYWNTN 110
                      7899******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MRRPCCAKEG LNRGAWSAEE DEILTYYIKS HGEGQWRDLP QRAGLKRCGK SCRLRWLNCL  60
RPNIKRGNIS EEEEELILRM HKLLGNRWAL IAARLPGRTD NEIKNYWNTN LRKRVRDRER  120
QKFGMQTDNE SGQGRLRIAN SIVSGEAHRV IRTKAVRCTK VLFQPQPLEK EQSHAMLSDV  180
PLTDSGNPLS SSHCPNDKNI DFLVDFGIDD LLAPDIDLVM SSDSLVHADK GIINEHEDVI  240
HVNFPAEEIP CPPTGCARRF VIGGEHFDLN CEIDFNALSS VLRHGCADIC LLNSHSSMFV  300
WIPTVSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-60MYB family protein