PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77292.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 178aa MW: 21040.1 Da PI: 8.964

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l ++k +G g+W+ +++ g++R++k+c++rw +yl OWM77292.1 13 RGAWSAEEDEILTYYIKSHGEGQWRDLPQRAGLKRCGKSCRLRWVNYL 60 89********************************************97 PP
2	Myb_DNA-binding	50.4	5.2e-16	71	110	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +eE+el+++ +k+lG++ W++Ia++++ gRt++++k++w++ OWM77292.1 71 EEEEELILRMHKLLGNR-WALIAARLP-GRTDNEIKNYWNTN 110 8**************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MRRPCCAKEG LNRGAWSAEE DEILTYYIKS HGEGQWRDLP QRAGLKRCGK SCRLRWVNYL 60 RPYIKRGNIC EEEEELILRM HKLLGNRWAL IAARLPGRTD NEIKNYWNTN LRKRVRDRDR 120 QKFGMRTRWY PAEEFPCPPT GCARRFVVGG EHIDLNCEID FNALSSLLRE GCDEIFAY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	6e-59	MYB family protein