PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77295.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 344aa MW: 38858.3 Da PI: 5.3382

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.3e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l d+vk +G g+W+ +++ g++R++k+c++rw++yl OWM77295.1 15 RGAWTAEEDRILTDYVKAHGEGRWANLPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP
2	Myb_DNA-binding	46.3	9.8e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+el+ +++k+lG++ W +Ia +++ gR+++++k++w+++l OWM77295.1 68 RGNISPDEEELIMRLHKLLGNR-WCLIAGRLP-GRSDNEIKNYWNSFL 113 7899****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRRPCCSKE EGLNRGAWTA EEDRILTDYV KAHGEGRWAN LPKRAGLKRC GKSCRLRWLN 60 YLRPGIKRGN ISPDEEELIM RLHKLLGNRW CLIAGRLPGR SDNEIKNYWN SFLSKRARKD 120 DIPRRKPPEL QRYSDRLEDR ANLQPKQNVD TSGNLSSTDQ PSPREEKPSM SLGAFWAAAL 180 KCSEGATDPE PRVSRQQDQH STCFGITNKD TRPHPPIDGD ILPKESENVE VANNGSAFKL 240 LSCSHRKDDV AENTEEDPVM DFDIGDVCLS DLLDADLTGS SSSSSPPFSD PQPAISSEEL 300 MLQDWNLIID SHQADNVWAP NHIVQYSSSS YIFDSPEVEL LWER

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRRPCCSKE EGLNRGAWTA EEDRILTDYV KAHGEGRWAN LPKRAGLKRC GKSCRLRWLN  60
YLRPGIKRGN ISPDEEELIM RLHKLLGNRW CLIAGRLPGR SDNEIKNYWN SFLSKRARKD  120
DIPRRKPPEL QRYSDRLEDR ANLQPKQNVD TSGNLSSTDQ PSPREEKPSM SLGAFWAAAL  180
KCSEGATDPE PRVSRQQDQH STCFGITNKD TRPHPPIDGD ILPKESENVE VANNGSAFKL  240
LSCSHRKDDV AENTEEDPVM DFDIGDVCLS DLLDADLTGS SSSSSPPFSD PQPAISSEEL  300
MLQDWNLIID SHQADNVWAP NHIVQYSSSS YIFDSPEVEL LWER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	3e-58	MYB family protein