PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM77403.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 690aa MW: 75607 Da PI: 7.177

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM77403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.1	3.9e-24	167	268	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+ OWM77403.1 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHSLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGELR 262 99**************************963.3445679********************************************..449999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ OWM77403.1 263 LGIRRA 268 ***996 PP
2	Auxin_resp	62.5	1.6e-21	296	352	4	60
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrls 60 a+s + vF+v+Y Pr++ts+F+ +++k+ k+l++++++GmRfkm+fe+ed+s +r+ OWM77403.1 296 ALSVGGVFNVYYDPRSTTSQFITPYRKFFKSLDCSFTPGMRFKMRFEGEDASGQRWD 352 6778889************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MAGLIDLNTV DDDEAPPTSA PLSSPSTSSS ALSASNSNAS SSSSAVAAAP PTAAPYPVCL 60 ELWQACAGPL ISLPRKGSGV AYFPQGQLEQ SSDLPVPACR LPPHVFCRVV DVKLYADATS 120 SDDAYAQVAL LPEHEQNEQK LRERDLEAEA EEDETEPAGK STTPHMFCKT LTASDTSTHG 180 GFSVPRRAAE DCFPPLDYSQ QRPSQELVAK DLHSLEWKFR HIYRGQPRRH LLTTGWSAFV 240 NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ VKGSATHPSL RIQHLNQSAL MEIPKALSVG 300 GVFNVYYDPR STTSQFITPY RKFFKSLDCS FTPGMRFKMR FEGEDASGQR WDNMDAIRCN 360 RICPWEIESC SSVPAANGFK LPGSKRTRFG IPPVGPEYPV PNGFGAPDFG ESYRFQKVLQ 420 GQENSGFDAA ACNGMESQNR PLSELRRNLL GSNGSQAIGT AYNCIGFGES FRFHKVLQGQ 480 ETFPRQSYGQ SIYDNEVRAN RRFGSFDTVQ AVSSWNEWPG STFMMGPNSH VGPQALPAQA 540 SSLSSVLTFP NAMTNFKMLP CLHEASKGLR VGNEGLKGDS LLWDRKLGIP DDCNHSRPLP 600 PSHHKGNRDV APFKRGCRLF GFSLMEGEKF SEKEADLGPP PLNPDASICS QLSTKEFVTS 660 ILYLLVGPRC FDDQGGLQRT LQRNALILHG

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MAGLIDLNTV DDDEAPPTSA PLSSPSTSSS ALSASNSNAS SSSSAVAAAP PTAAPYPVCL  60
ELWQACAGPL ISLPRKGSGV AYFPQGQLEQ SSDLPVPACR LPPHVFCRVV DVKLYADATS  120
SDDAYAQVAL LPEHEQNEQK LRERDLEAEA EEDETEPAGK STTPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYSQ QRPSQELVAK DLHSLEWKFR HIYRGQPRRH LLTTGWSAFV  240
NKKKLVSGDA VLFLRGEDGE LRLGIRRAAQ VKGSATHPSL RIQHLNQSAL MEIPKALSVG  300
GVFNVYYDPR STTSQFITPY RKFFKSLDCS FTPGMRFKMR FEGEDASGQR WDNMDAIRCN  360
RICPWEIESC SSVPAANGFK LPGSKRTRFG IPPVGPEYPV PNGFGAPDFG ESYRFQKVLQ  420
GQENSGFDAA ACNGMESQNR PLSELRRNLL GSNGSQAIGT AYNCIGFGES FRFHKVLQGQ  480
ETFPRQSYGQ SIYDNEVRAN RRFGSFDTVQ AVSSWNEWPG STFMMGPNSH VGPQALPAQA  540
SSLSSVLTFP NAMTNFKMLP CLHEASKGLR VGNEGLKGDS LLWDRKLGIP DDCNHSRPLP  600
PSHHKGNRDV APFKRGCRLF GFSLMEGEKF SEKEADLGPP PLNPDASICS QLSTKEFVTS  660
ILYLLVGPRC FDDQGGLQRT LQRNALILHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-145	ARF family protein