PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77522.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19918.4 Da    PI: 8.2107
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.2e-20250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                krie++  r vtfskRr gi KKA+EL  +C++ev v++fs+tgk y +
  OWM77522.1  2 KRIEDDDDRMVTFSKRRSGIYKKASELVAMCGVEVGVVVFSPTGKPYSF 50
                79*******************************************8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MKRIEDDDDR MVTFSKRRSG IYKKASELVA MCGVEVGVVV FSPTGKPYSF GHPSVRAVLN  60
KFLNRNAPPP TDNRLQPFID ANIRMRRDGY NDYVNQLLAR LDDAKERGKD LSRITRATSE  120
GNSSNWARRW WEKSPEERSF DELKEEALFL EALHRDICNY LNHPVDLNAL GSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23M-type_MADS family protein