PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77523.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24433.5 Da    PI: 5.4324
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.8e-201765149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                krien+  r +tfskRr gi KKA+EL  +C++ev v++fs+tgk y +
  OWM77523.1 17 KRIENDDDRMITFSKRRSGIYKKASELVAMCGIEVGVVVFSPTGKPYSF 65
                79*******************************************8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MASSSKQTRG KQKIEMKRIE NDDDRMITFS KRRSGIYKKA SELVAMCGIE VGVVVFSPTG  60
KPYSFGHPSV QTVLNKFLNR NVPPPADDKL QPLIDADIRM RRESYNDFFN QLLARLDDAK  120
ERGKNLSRIT HATSEGNSSN WERGWWEKPP QELSFDELKK EALFLEALHR EICNFLNYPA  180
DLNALGLVDP VPDPRAVNDP PTGVEDGASP SGEDVQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-34M-type_MADS family protein