PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77524.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24196.2 Da    PI: 5.8085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.7e-191765149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                kri+++  r +tfskRr gi KKA+EL ++C++ev +++fs+tgk y +
  OWM77524.1 17 KRIDDDDDRMITFSKRRSGIYKKASELVTMCGTEVGIVVFSPTGKPYSF 65
                79*******************************************8887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MASSSKQTRG KQKIEMKRID DDDDRMITFS KRRSGIYKKA SELVTMCGTE VGIVVFSPTG  60
KPYSFGHPSV QAVLNKFLNR NVPPPADDRL QPLIDANIRM RRERYNDFFN QLLARLDNAK  120
ERGKDLSRIT HATSEGNSSN WERGWWEKPL QELSFDELKE EALFLEALHR DICNYLNYPS  180
DLNALGVVDP ALDPRAVNDP PTGVEGGAGP SGEDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104RMRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-34M-type_MADS family protein