PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM77617.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16496.6 Da    PI: 4.8628
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM77617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.1e-122401149
                HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +tfskRr gi KKA+EL    +aev ++ fs+t k y +
  OWM77617.1  2 ITFSKRRSGIYKKASELVAIGGAEVGIVAFSPTEKPYSF 40
                7********************************998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MITFSKRRSG IYKKASELVA IGGAEVGIVA FSPTEKPYSF RHPFVQAVIN KFLNRNASLP  60
ADDRREERIC QRITCDTSEG NPPNWERRWW EKPPEELSFD ELKEEALFLE ALSRAICNIL  120
NYPDDLHALG LWVEVGASSV QDGQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-19M-type_MADS family protein