PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78009.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 496aa MW: 54069.3 Da PI: 9.268

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OWM78009.1 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	15.6	4.5e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ OWM78009.1 82 WKCDKCSKKYAVQSDWKAHQKTC 104 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNT EPKKRVYICP EPTCVHHNPA 60 RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR 120 DSFITHRAFC DALAEENNKV NQGLAGNQMP ELISSSNNHN NAPLNIGMNE FATTFDPKNP 180 LKSLPQELIP VPFKSNNLNS MAMSGGIGGM FSSSSGTLFG GPRSSMQMSM SPSSSSLQLS 240 SNTSSSGFNY LQDTKTGCQV SPSSAHMSAT ALLQKAAQMG ASASNSINSP MMQKSFTSSM 300 AGPNQFTPIR PPSYKEASQQ QNDSSSTYEQ HRFPSQPEPN FIGTTTNGSF TNHLLQKNNP 360 QETMSHLIDG ANGIGSPGPQ PMPDHLGIFS NMYGPALDHQ GNQLGFMKAS SRSIGDDQDS 420 SGSSMVPSGP DRNSQARPSR FGAAADSNNV MTVDFLGIGG GSRGPGSRSN LHEQQMSVMG 480 HFGHGESAME KQIWDL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNT EPKKRVYICP EPTCVHHNPA  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEENNKV NQGLAGNQMP ELISSSNNHN NAPLNIGMNE FATTFDPKNP  180
LKSLPQELIP VPFKSNNLNS MAMSGGIGGM FSSSSGTLFG GPRSSMQMSM SPSSSSLQLS  240
SNTSSSGFNY LQDTKTGCQV SPSSAHMSAT ALLQKAAQMG ASASNSINSP MMQKSFTSSM  300
AGPNQFTPIR PPSYKEASQQ QNDSSSTYEQ HRFPSQPEPN FIGTTTNGSF TNHLLQKNNP  360
QETMSHLIDG ANGIGSPGPQ PMPDHLGIFS NMYGPALDHQ GNQLGFMKAS SRSIGDDQDS  420
SGSSMVPSGP DRNSQARPSR FGAAADSNNV MTVDFLGIGG GSRGPGSRSN LHEQQMSVMG  480
HFGHGESAME KQIWDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	7e-84	C2H2 family protein