PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78021.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 536aa MW: 57149.6 Da PI: 8.4467

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.5	6.1e-10	50	76	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG rC+++H++ OWM78021.1 50 PGVPDCAYYMRTGFCGYGRRCRYNHPR 76 5789*********************96 PP
2	zf-CCCH	39.9	6.9e-13	95	121	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ OWM78021.1 95 PGEPACQFYLKTGTCKFGASCKFHHPK 121 57899********************96 PP
3	zf-CCCH	36.1	1.1e-11	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ OWM78021.1 142 GEKECSYYLKTGQCKFGITCKFHHPQ 167 6789********************97 PP
4	zf-CCCH	38.5	1.9e-12	299	325	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+F+H++ OWM78021.1 299 PGEPECQYYLRTGDCKFGSSCRFHHPR 325 5799*********************96 PP
5	zf-CCCH	30.2	8e-10	406	428	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+f++++G+Ck+G+ CkF H+ OWM78021.1 406 QPCSFYLQNGHCKFGSICKFDHP 428 69********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MELYGLNPAR NGSQSGHQPA DWAPSGGETG LEESMWQLGL GSSESYPERP GVPDCAYYMR 60 TGFCGYGRRC RYNHPRDRAA VAAAVRATGD YPERPGEPAC QFYLKTGTCK FGASCKFHHP 120 KHAAGSLSRV PLNSYGYPLR QGEKECSYYL KTGQCKFGIT CKFHHPQPAG SSMPASAPQF 180 YPPVQSPTVT PVPEQYGGAA TSLRVARPTL LPGSYVPGAY GHVLISPGVV SMTGWNPYSA 240 PVSPALSPGA QPAVGGASLY DVAQLSSSSS ALTVAYPPAP SPGGPSRGSQ KEQVFPERPG 300 EPECQYYLRT GDCKFGSSCR FHHPRDRILQ GPNFVLSPLG LPLRPFARLY PLDQKDMAPA 360 LRPIDFGVPI PSKVEVETSA RDYTPPQYLT LLFTDLGVLT PSVGVQPCSF YLQNGHCKFG 420 SICKFDHPIG PMRYNPSASS LIDVPVAPYP VGSLLGGTLA PPSSELRSEL IPGSSMKDSY 480 PSVRVPSGSN TTSSVGLMFS QTGAVSISDV QLPVQSSAPL SSSRNTKEGG DVRISS

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MELYGLNPAR NGSQSGHQPA DWAPSGGETG LEESMWQLGL GSSESYPERP GVPDCAYYMR  60
TGFCGYGRRC RYNHPRDRAA VAAAVRATGD YPERPGEPAC QFYLKTGTCK FGASCKFHHP  120
KHAAGSLSRV PLNSYGYPLR QGEKECSYYL KTGQCKFGIT CKFHHPQPAG SSMPASAPQF  180
YPPVQSPTVT PVPEQYGGAA TSLRVARPTL LPGSYVPGAY GHVLISPGVV SMTGWNPYSA  240
PVSPALSPGA QPAVGGASLY DVAQLSSSSS ALTVAYPPAP SPGGPSRGSQ KEQVFPERPG  300
EPECQYYLRT GDCKFGSSCR FHHPRDRILQ GPNFVLSPLG LPLRPFARLY PLDQKDMAPA  360
LRPIDFGVPI PSKVEVETSA RDYTPPQYLT LLFTDLGVLT PSVGVQPCSF YLQNGHCKFG  420
SICKFDHPIG PMRYNPSASS LIDVPVAPYP VGSLLGGTLA PPSSELRSEL IPGSSMKDSY  480
PSVRVPSGSN TTSSVGLMFS QTGAVSISDV QLPVQSSAPL SSSRNTKEGG DVRISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-160	C3H family protein