PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78030.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

DBB

Protein Properties

Length: 356aa MW: 38869.9 Da PI: 4.4727

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.2	6.1e-07	11	54	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + + l+C+ ++ lC C H+ Ht++ OWM78030.1 11 RRLCDYCAAASAVLYCRADSARLCLRCDRDVHSTnplftkHTRS 54 689*****************************668888888875 PP
2	zf-B_box	22.9	1.8e-07	55	95	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42 C++++ +++fCe ++ lC +C +H g H+++p+ OWM78030.1 55 LLCDLCHAASASIFCEAHRSVLCGTCDWDSHDGvvHNRRPI 95 57***************************88999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MKEEDQNPPE RRLCDYCAAA SAVLYCRADS ARLCLRCDRD VHSTNPLFTK HTRSLLCDLC 60 HAASASIFCE AHRSVLCGTC DWDSHDGVVH NRRPIEGFSG CPSSSEILAL FGFDEGKEGA 120 LLAGDDGGFA DSLLWETPAF VSLDDLIASE EDFGGLQAFD VPPLPKNRNA TCGKHKEEIL 180 RQIRLLATSE TCLNFENVDA FEPVRDDQFL DLNPASITGN PDTGCEGHGD PFAVPDHEAV 240 TFQWLSDDGD MGNQASNSLA FLSSYHDGNL TNPEKQPQVG SLSCGNESAE GQQENPVTVN 300 SPPVQPRAVQ YDLNSQERES AISRYKEKRK TRSGDCPKRL MDGGTFGASF HGQTMT

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MKEEDQNPPE RRLCDYCAAA SAVLYCRADS ARLCLRCDRD VHSTNPLFTK HTRSLLCDLC  60
HAASASIFCE AHRSVLCGTC DWDSHDGVVH NRRPIEGFSG CPSSSEILAL FGFDEGKEGA  120
LLAGDDGGFA DSLLWETPAF VSLDDLIASE EDFGGLQAFD VPPLPKNRNA TCGKHKEEIL  180
RQIRLLATSE TCLNFENVDA FEPVRDDQFL DLNPASITGN PDTGCEGHGD PFAVPDHEAV  240
TFQWLSDDGD MGNQASNSLA FLSSYHDGNL TNPEKQPQVG SLSCGNESAE GQQENPVTVN  300
SPPVQPRAVQ YDLNSQERES AISRYKEKRK TRSGDCPKRL MDGGTFGASF HGQTMT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	9e-68	CO-like family protein