PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78273.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21784.4 Da    PI: 10.2569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.6e-14952144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                ++i+ +s r +tf kR++g++KK eE S+ C+++ ++ii+  ++
  OWM78273.1  9 EFISKDSSRRITFEKRKKGLMKKLEEFSIRCGVDTCMIIYNRDN 52
                689*************************************8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MGRGKLVLEF ISKDSSRRIT FEKRKKGLMK KLEEFSIRCG VDTCMIIYNR DNSSGRGPTI  60
WPRIPERVKQ VIDRYFSKGV DQCNKHAMDL REYFMSQKRK ADKELAKVRS ANWAAKYPGS  120
EDLLNGLSQD QLQMVLSVLR MKLEIMKKRH LAAKESAVMN ALGMVPMQMD DFKYDTPVHS  180
HMNDYMPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RRITFEKRKKGLMKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.26e-21M-type_MADS family protein