PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78447.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SRS

Protein Properties

Length: 341aa MW: 35927.3 Da PI: 9.6954

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	182.8	1.4e-56	122	264	4	152
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 + +C+dCGn+akk+C+++RCRtCCksrg+dCathvkstWvpa++rrerq ++ s s+ +++ ++++ +++s+ s++ +++++e OWM78447.1 122 NMRACRDCGNRAKKECSYRRCRTCCKSRGYDCATHVKSTWVPASRRRERQVAMVGISFAGGGSSGSSSGAAAKKQRVENASS-----ASNSATPRSFES 215 5568*******************************************998888777766666555555555443333333.....344455666776 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 s + ++v+++avfrc+rv++++d+ +elaYq++vsi+GhvfkG+Lyd+G+ OWM78447.1 216 SPF-RQVRAPAVFRCIRVTAISDNAAELAYQATVSISGHVFKGYLYDHGT 264 655.79****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MAATHHLFNY APTTASATIP TSASDHLNML GLRDVVFISP QQQHHHHQPI IPSSAAAALG 60 VGVSIFPLLA ATPCVDIAST DPQAASSSLA AAKKDNIPMG IEIERLDDGG SGNGNVNSGG 120 SNMRACRDCG NRAKKECSYR RCRTCCKSRG YDCATHVKST WVPASRRRER QVAMVGISFA 180 GGGSSGSSSG AAAKKQRVEN ASSASNSATP RSFESSPFRQ VRAPAVFRCI RVTAISDNAA 240 ELAYQATVSI SGHVFKGYLY DHGTGAKNSS GSIASISKLR LEEGTTSMRD RDSSPPPPIV 300 NPSNAFAAAS GSQRLLGVVH RSKWSQDVSF TDQIGCLKMQ T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	8e-45	SRS family protein