PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78479.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C2H2
Protein Properties Length: 299aa    MW: 31892.7 Da    PI: 6.7186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013111133123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C++ Fs++  L  H++ H
  OWM78479.1 111 FTCNFCKREFSTSQALGGHQNAH 133
                 89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MAESDESKSS PSDSSGISAA SNGGRGMTRK TKEKGDAKLV SEAETVESSS HHQPSLDLKL  60
SNEYPGTGTN KAGAGQDVIL DSGQEAGNSS RANKDVVEHG QGQKPPEPRV FTCNFCKREF  120
STSQALGGHQ NAHKQERALA KRNQGLEQGG FGPPGHFSCY HPYYNLTSTL SPLFGSLGRS  180
LGVQAESLIH KSPWGQSSSH GYRPWPRPGM GNPQLAPMDC HRVRLVEDYH HQGHQSHGGG  240
FRQPLGCDEH GDMVSSRTIA AAGPSNGSIS SGLHRNDDSP SNDISEEEDA NGLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-18C2H2 family protein