PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78509.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 651aa MW: 73946.7 Da PI: 7.6164

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.6e-08	462	503	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE ell ++ +++++g +W+ I+++mg+gR+ +++ OWM78509.1 462 KPWGREEIELLRKGMQKYPKGtsrRWEVISEYMGTGRSVEEI 503 68***********************************99876 PP
2	Myb_DNA-binding	26.8	1.2e-08	594	637	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ + l++a k ++++ +W+++a+ ++ g+t +qc+ ++ OWM78509.1 594 VWSAVQERALIQALKTFPKEtsqRWERVAAAVP-GKTVNQCRKKL 637 6******************************.******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MAVHRCRLIT YSEEIIDGQP IYVASNCLPV KAPRFEPAGH SFHATALKLL GYGEEEEADG 60 DDQSVSSDKD QSFIHSADPS YSSKGKKKSG SGSKQQDHYA LLGLSHLRYL ASEDQIKKAY 120 RETALKYHPD KQAALLLAEE TEAAKQAKKD EIESHFKAIQ EAYEALIDPV KRRIYDSTDE 180 FDDEIPTDCA PQDFFKVFGP AFMRNGRWSV TQPVPSLGGE DAPLKEVDNF YDFWYSFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNAKL SEGARKEEYV RIRTLVDNAY KRDPRILRRK 300 EEEKAERQRK KEAKILAKRQ QEEEAARKAE EEKRRKEEEE RRAAEAALQQ KKVKEKEKKL 360 LRKERARLRA LSASLVSQRL LGISEDDVDS LCTSLDTEQL RNICDKMESR QGAERAEVLR 420 DAQGSSHKSE DEKQGEKQNQ QQNGSMRVSG SLPFGSTEKK EKPWGREEIE LLRKGMQKYP 480 KGTSRRWEVI SEYMGTGRSV EEILKATKTV LLQKPDSAKA FDSFLEKRKP AQSIVSPLTT 540 REEVEGTPVA AHAPETTAAK VGEAEESSNS RSGSAPNPED SVTENGGSGS DQDVWSAVQE 600 RALIQALKTF PKETSQRWER VAAAVPGKTV NQCRKKLALL KENFRSKKNA V

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MAVHRCRLIT YSEEIIDGQP IYVASNCLPV KAPRFEPAGH SFHATALKLL GYGEEEEADG  60
DDQSVSSDKD QSFIHSADPS YSSKGKKKSG SGSKQQDHYA LLGLSHLRYL ASEDQIKKAY  120
RETALKYHPD KQAALLLAEE TEAAKQAKKD EIESHFKAIQ EAYEALIDPV KRRIYDSTDE  180
FDDEIPTDCA PQDFFKVFGP AFMRNGRWSV TQPVPSLGGE DAPLKEVDNF YDFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEGARKEEYV RIRTLVDNAY KRDPRILRRK  300
EEEKAERQRK KEAKILAKRQ QEEEAARKAE EEKRRKEEEE RRAAEAALQQ KKVKEKEKKL  360
LRKERARLRA LSASLVSQRL LGISEDDVDS LCTSLDTEQL RNICDKMESR QGAERAEVLR  420
DAQGSSHKSE DEKQGEKQNQ QQNGSMRVSG SLPFGSTEKK EKPWGREEIE LLRKGMQKYP  480
KGTSRRWEVI SEYMGTGRSV EEILKATKTV LLQKPDSAKA FDSFLEKRKP AQSIVSPLTT  540
REEVEGTPVA AHAPETTAAK VGEAEESSNS RSGSAPNPED SVTENGGSGS DQDVWSAVQE  600
RALIQALKTF PKETSQRWER VAAAVPGKTV NQCRKKLALL KENFRSKKNA V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	356	KRRKEEEERRAAEAALQQKKVKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-115	MYB family protein