PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78584.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22348.4 Da    PI: 7.5733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.8e-121761751
                HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                + rq  fsk r  i  KA EL +LCd+++ +++fs+ g+l  +ss
  OWM78584.1 17 ITRQLKFSKGRDWIVQKAAELAILCDVDIGILMFSPGGRLTSFSS 61
                579999************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MSTESQEEQS RDRLDGITRQ LKFSKGRDWI VQKAAELAIL CDVDIGILMF SPGGRLTSFS  60
SNARIQVLAL RYNGNFLYHY RFEDKSKGVS DFHVHLAPQA LEEKFWRLKQ RQIEVQGKMR  120
YYSPQLESIT SVQEAEVHRR FLIEALQKLE ELKEKLRQNV QQPSASIEAS AAEGMDQICS  180
LGTSNPQMPR GDTLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-16MIKC_MADS family protein