PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78678.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 470aa MW: 51194.9 Da PI: 9.214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	81	101	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H OWM78678.1 81 CEICGKGFQRDQNLQLHRRGH 101 *******************88 PP
2	zf-C2H2	13.5	0.00022	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OWM78678.1 155 WKCEKCSKRYAVQSDWKAHSKTC 177 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MGISEGMAED QTISPINGFI HNPITTGSST NPAAAPAIKK KRNLPGTPGK ITLFLYTHTY 60 PDAEVIALSP KTLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR SSKEPRKRVY 120 VCPEKSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF SRRDSFITHR AFCDALAEET ARVNAASSML NPPTTVAYPF MGSSLCPTLI 240 SSQNFSSIFK PISTSADLTN AMEQTRPTGL SLWMDQPPSQ AHHEPNWLDQ IHRLSSSNVP 300 PLMSSCSNPP PLNQGYHLSQ LLSVPSLYST QQHIAPQAPN MSATALLQKA AQIGAATSTT 360 TGSELSFVVS GLGSKFDSNS MGSQFQDCGD NNKFSGLYGP SNSTLTSLGS DQSVLESSSN 420 GICTLTTLPI YPPAKRRNTQ MEANSAGGGQ TRDFLGVGVH TICNTSTING

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MGISEGMAED QTISPINGFI HNPITTGSST NPAAAPAIKK KRNLPGTPGK ITLFLYTHTY  60
PDAEVIALSP KTLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR SSKEPRKRVY  120
VCPEKSCVHH HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF SRRDSFITHR AFCDALAEET ARVNAASSML NPPTTVAYPF MGSSLCPTLI  240
SSQNFSSIFK PISTSADLTN AMEQTRPTGL SLWMDQPPSQ AHHEPNWLDQ IHRLSSSNVP  300
PLMSSCSNPP PLNQGYHLSQ LLSVPSLYST QQHIAPQAPN MSATALLQKA AQIGAATSTT  360
TGSELSFVVS GLGSKFDSNS MGSQFQDCGD NNKFSGLYGP SNSTLTSLGS DQSVLESSSN  420
GICTLTTLPI YPPAKRRNTQ MEANSAGGGQ TRDFLGVGVH TICNTSTING

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-144	C2H2 family protein