PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM78761.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 286aa MW: 32850.3 Da PI: 8.8815

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM78761.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	39	88	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ OWM78761.1 39 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 88 79***********************************************8 PP
2	K-box	112.3	4.9e-37	129	226	3	100
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +s++ s++e++++++qqe++kL+++i+++q+++Rh+lGe ++sLs+keL++Le +Lek++ ++RskK e+l+++ie++qk+e elq++n++Lr+k++e OWM78761.1 129 SSTTASVTETNTQYYQQEASKLRRQIREIQNSNRHILGEAIGSLSFKELKNLEGRLEKAIGRVRSKKCEMLFAEIEYMQKREIELQNDNMYLRAKIAE 226 5666779****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MLSCVLFSSP SAAATEFPSE SPDFASSQRK SGRGKIEIKR IENTTNRQVT FCKRRNGLLK 60 KAYELSVLCD AEVALIVFSS RGRLYEYANN SEFIIMFFHF FFVIDERITF IVLSVRGTIE 120 RYKKTCTDSS TTASVTETNT QYYQQEASKL RRQIREIQNS NRHILGEAIG SLSFKELKNL 180 EGRLEKAIGR VRSKKCEMLF AEIEYMQKRE IELQNDNMYL RAKIAEADRA AAAQQQQPPN 240 LMPAEGPTYD SIQTQSYDRN FLPVNLLELS NHQQYSRTDQ TALQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.3	1e-114	MIKC_MADS family protein