PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM78844.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 314aa    MW: 33926.2 Da    PI: 9.852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM78844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-1770115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
       OWM78844.1  70 RGHWRPAEDAKLKELVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 115
                      899*****************************.***********996 PP
2Myb_DNA-binding57.14e-18122165146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
       OWM78844.1 122 KKAFTEEEEEKLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 165
                      679*******************.*********.***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MSLHRPQTTV SGFNGLQEMN FLPPPEISLS PGTGGRREKE STGGLLMGLE AVNTAVKFSG  60
VQSHTKLCAR GHWRPAEDAK LKELVAQFGP QNWNLIAEHL DGRSGKSCRL RWFNQLDPRI  120
NKKAFTEEEE EKLLAAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIVARK RREQQHSSVS  180
YRRRLSKPGH LAVSPKAGQD TARACSDSTV TSNVEEPGGG STSTGLSLTP SSGKAPLLTL  240
SSPNAGSPGS NGANSKVMEN VSSYKSPAGP VATSDCSNSE VSAAESVANI SMPADQYKMN  300
VPCFIDFLRV GSNC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-69MYB family protein