PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79024.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

M-type_MADS

Protein Properties

Length: 457aa MW: 50240.1 Da PI: 5.0443

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79024.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.7	5.6e-12	11	53	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i +++ r+ +f kR+ g++KK eEL +LCd+ +ii ++++k OWM79024.1 11 IPSDMARKASFRKRKGGLMKKMEELNTLCDVHGFLIIHGPEDK 53 678899********************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MTRKKVKMAY IPSDMARKAS FRKRKGGLMK KMEELNTLCD VHGFLIIHGP EDKEPTVWPS 60 PAVAEELLER FMSVSDMERG RKMMDHEHYL RERITKSQEL IAKHARRNRE LQAIHFMNRI 120 QWDGAQLSGF SSGDLNELVW LIDEKRREVA KRRNLSQYVA AASSCPPSPL DHLVPPSSPE 180 LEIYLPQVRF SGEDDEEDLP EFNAGLDNSD SEASRPPTSS SGMSTLQVPP SGSRVDTGTG 240 LINSHDALMW EQFISGLMND HPMTRNTAPN ARNLMGAGIL RAPTTAPNVS GSDPNVVLAA 300 KNIGVPTSVA PNMAPDQVDI GIIEGREQSL GLHNGNNMGG GDGLHNMEVE TREDARGIPD 360 SRGNESDYAF VLQDDDTVGG ESIQSHHQVG SGDQAGGGYG IVLPQPNFEH DIYPQNPLLM 420 SHFDIMNRGT GDGGSRSASD VEPTKTPGFN TDWLFYS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MTRKKVKMAY IPSDMARKAS FRKRKGGLMK KMEELNTLCD VHGFLIIHGP EDKEPTVWPS  60
PAVAEELLER FMSVSDMERG RKMMDHEHYL RERITKSQEL IAKHARRNRE LQAIHFMNRI  120
QWDGAQLSGF SSGDLNELVW LIDEKRREVA KRRNLSQYVA AASSCPPSPL DHLVPPSSPE  180
LEIYLPQVRF SGEDDEEDLP EFNAGLDNSD SEASRPPTSS SGMSTLQVPP SGSRVDTGTG  240
LINSHDALMW EQFISGLMND HPMTRNTAPN ARNLMGAGIL RAPTTAPNVS GSDPNVVLAA  300
KNIGVPTSVA PNMAPDQVDI GIIEGREQSL GLHNGNNMGG GDGLHNMEVE TREDARGIPD  360
SRGNESDYAF VLQDDDTVGG ESIQSHHQVG SGDQAGGGYG IVLPQPNFEH DIYPQNPLLM  420
SHFDIMNRGT GDGGSRSASD VEPTKTPGFN TDWLFYS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKMAYIPSDMARKASFRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31640.1	2e-31	M-type_MADS family protein