PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79127.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 242aa    MW: 26687.4 Da    PI: 9.1288
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.4e-221762449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +n+sn qvtfskRr g++KKA+EL++LC+a++a+i+fs+ +k y +
  OWM79127.1 17 DNDSNLQVTFSKRRSGLFKKASELCTLCGADIAIIVFSPGDKAYSF 62
                8**************************************9999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MAKTSKGRQK IQMVKMDNDS NLQVTFSKRR SGLFKKASEL CTLCGADIAI IVFSPGDKAY  60
SFGHPCVERV LERFLNGDNN YNPNSDQQIS AGTLQFMEMQ RNTTLRELNH QLGQLLAQLE  120
VEKKRSEELK QMMRVTQVQS RCKGTIDDLS PSELEQLKAS LEELKKNVSR QAERVLAQAA  180
NPPPFFGAAG PNVAGPSAAV IPYDMNNNIG VFNIGGGFSA GGGFNGALIP NIPYNYPFGR  240
YY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-58M-type_MADS family protein