PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79304.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 673aa MW: 74959.4 Da PI: 6.8995

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71	1.5e-22	132	232	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +++el OWM79304.1 132 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGESGEL 226 99**************************964333..4459*********************************************..449999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v+r OWM79304.1 227 RVGVRR 232 ****97 PP
2	Auxin_resp	110.6	1.6e-36	258	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRf+m+fe+e+++err+sGt+vgv + +++ W++S+WrsLk OWM79304.1 258 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFRMRFEGEEVPERRFSGTIVGVGNDKSSGWTDSEWRSLK 340 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MHQGSEQQMP SFNLPSKILC KVVNVHLRDC YRLNISLDLL LVFQWRIQLL VTLHQDPIQL 60 EASMHQGSEQ QMPSFNLPSK ILCKVVNVHL RAEPDTDEVY AQITLLPQTD QAEVTSSDPP 120 VPEPPRCTVH SFCKTLTASD TSTHGGFSVL RRHADDCLPP LDMSQQPPWQ ELVATDLHGN 180 EWHFRHIFRG QPRRHLLTTG WSVFVSSKKL VAGDAFIFLR GESGELRVGV RRLMRQQSNM 240 PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSRSE FIVSVNKYLE ARSHKLSVGM 300 RFRMRFEGEE VPERRFSGTI VGVGNDKSSG WTDSEWRSLK VQWDEPSSIP RPDRVSPWEL 360 EPLVATAPSN SQPTQRNKRA RPPVLPSAPD LSVLGSWKSP IDSPLGRDLY PSPKFSSTTQ 420 GSSLGCAGNG SLTTVASGSI YWPKHAETIS ESFTPLNSNR ESGEKRQSTG SGCRLFGIQL 480 RDATNLEENS PAVVTHGTAG DDRPIPPGDA DSDQYSEPSN LNRSNIPSMS CDPDKSCLKS 540 SQESHSRTIR SCTKVHMQGI AVGRAVDLTR FHRYEDLLVK LEGMFDIEGE LCGSERKWQV 600 VYTDDEDDVM MVGDDPWHEF CSIVRKIYIY TTEEVKKLSP KIKFPANEVK TSKLDSDTAG 660 NTDDRSSIVG SGC

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MHQGSEQQMP SFNLPSKILC KVVNVHLRDC YRLNISLDLL LVFQWRIQLL VTLHQDPIQL  60
EASMHQGSEQ QMPSFNLPSK ILCKVVNVHL RAEPDTDEVY AQITLLPQTD QAEVTSSDPP  120
VPEPPRCTVH SFCKTLTASD TSTHGGFSVL RRHADDCLPP LDMSQQPPWQ ELVATDLHGN  180
EWHFRHIFRG QPRRHLLTTG WSVFVSSKKL VAGDAFIFLR GESGELRVGV RRLMRQQSNM  240
PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSRSE FIVSVNKYLE ARSHKLSVGM  300
RFRMRFEGEE VPERRFSGTI VGVGNDKSSG WTDSEWRSLK VQWDEPSSIP RPDRVSPWEL  360
EPLVATAPSN SQPTQRNKRA RPPVLPSAPD LSVLGSWKSP IDSPLGRDLY PSPKFSSTTQ  420
GSSLGCAGNG SLTTVASGSI YWPKHAETIS ESFTPLNSNR ESGEKRQSTG SGCRLFGIQL  480
RDATNLEENS PAVVTHGTAG DDRPIPPGDA DSDQYSEPSN LNRSNIPSMS CDPDKSCLKS  540
SQESHSRTIR SCTKVHMQGI AVGRAVDLTR FHRYEDLLVK LEGMFDIEGE LCGSERKWQV  600
VYTDDEDDVM MVGDDPWHEF CSIVRKIYIY TTEEVKKLSP KIKFPANEVK TSKLDSDTAG  660
NTDDRSSIVG SGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein