PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79377.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GATA
Protein Properties Length: 253aa    MW: 27804 Da    PI: 5.1032
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.69.9e-15741135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C +Cg+++TplWR+gp  ++ LCnaCG ++r +g+
  OWM79377.1  7 CCHCGAKETPLWRNGPLEKPVLCNACGSRWRIRGT 41
                99**************99999**********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MRKQGPCCHC GAKETPLWRN GPLEKPVLCN ACGSRWRIRG TLENYVPKRG HGGGRRRSRK  60
MGYVIHDVNV DKTIPTSTIG TERAIGKGKN TSTSCAMNAN RTSESEICTI NRSTSESVTS  120
DSQKIIFHIV IKSEDEEDDD DGITDSGKDE GPSEADNEVP SPTGAFAHIK SLHRELLKLY  180
IEEKSSMEEE EEAVLIDNVN SFMYENEIMY GSYLLKPPLP NISPTEEAAL KGSASSSSSV  240
NQLDAKEETP PLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.13e-22GATA family protein