PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79400.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 475aa MW: 52149 Da PI: 6.7512

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	9.9e-20	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++k++G g+W++ +r g++R++k+c++rw +yl OWM79400.1 16 KGPWTPEEDQKLVDYIKRHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 63 79********************************************97 PP
2	Myb_DNA-binding	58.5	1.5e-18	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+el++++++ lG++ W++Ia++++ gRt++++k++w+++l OWM79400.1 69 RGNFSEEEEELIINLHQVLGNK-WSAIAAHLP-GRTDNEIKNFWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MGRAPCCDDS GGSLKKGPWT PEEDQKLVDY IKRHGHGSWR ALPRLAGLNR CGKSCRLRWT 60 NYLRPDIKRG NFSEEEEELI INLHQVLGNK WSAIAAHLPG RTDNEIKNFW NTHLKKKLLQ 120 MGIDPATHRP RTDHDHLVSQ LLAGSFPGLQ QLFATVANYN YNYSSLSSGL LMTLMNSNNN 180 PAASAAALAA TLWAADSNIN NSNTIMSKLQ QQLQSSSSSS SATATNDAYF QLMKLKLRLH 240 DGSLIQQQQP QPQGAIAHSS FSKSSSSVDH NSSRSLPNEY LQYSCGGKNS EHDHQLEPKG 300 GTAGSAAGLV NSNNDPCQPL SRTNTVSLAE ENIIPTAPVA SCNNFQELLM KDRQNDQFLL 360 GDLHEESPSL PPRPPHHNHL PMSTNGASYR PLATALSSCD DSSLFADIEN SIPPLVSAEL 420 IMDRKEMKKS TCKSSSKDKY STAAASCTSN TTYEGWGDIM ADDDASDSYW KEFIE

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MGRAPCCDDS GGSLKKGPWT PEEDQKLVDY IKRHGHGSWR ALPRLAGLNR CGKSCRLRWT  60
NYLRPDIKRG NFSEEEEELI INLHQVLGNK WSAIAAHLPG RTDNEIKNFW NTHLKKKLLQ  120
MGIDPATHRP RTDHDHLVSQ LLAGSFPGLQ QLFATVANYN YNYSSLSSGL LMTLMNSNNN  180
PAASAAALAA TLWAADSNIN NSNTIMSKLQ QQLQSSSSSS SATATNDAYF QLMKLKLRLH  240
DGSLIQQQQP QPQGAIAHSS FSKSSSSVDH NSSRSLPNEY LQYSCGGKNS EHDHQLEPKG  300
GTAGSAAGLV NSNNDPCQPL SRTNTVSLAE ENIIPTAPVA SCNNFQELLM KDRQNDQFLL  360
GDLHEESPSL PPRPPHHNHL PMSTNGASYR PLATALSSCD DSSLFADIEN SIPPLVSAEL  420
IMDRKEMKKS TCKSSSKDKY STAAASCTSN TTYEGWGDIM ADDDASDSYW KEFIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	1e-82	MYB family protein