PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79485.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family bHLH
Protein Properties Length: 254aa    MW: 28644.3 Da    PI: 8.3485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-1382134155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 r+++h e+E++RR+++ s ++ Lr+llP       ++K s ++   +Av+YIk+L+
  OWM79485.1  82 RKKKHREIEKQRRQEMASLYAGLRSLLPLeY---IKGKRSISDHMNEAVNYIKHLH 134
                 7899*************************77...********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MFPLQRSGEL FFGVGSKSST NSHHQLHRIP QDLISSDLHD HYDVESSGAL DASNIGQRRR  60
KASVVAASSK SESVGVEDES TRKKKHREIE KQRRQEMASL YAGLRSLLPL EYIKGKRSIS  120
DHMNEAVNYI KHLHVKLSEL SDHRDKLKRL SKSVPSNSSR ADSTDCSQNC VIEVVHLSDG  180
DDVEIIIIRG LKKKEENSPL SIVLELLSQR GLNVVNCFYT KVNDRTLNRF HCKATDANSM  240
DLEELRQILE AAIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15885RRRKASVVAASSKSESVGVEDESTRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.12e-33bHLH family protein