PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79498.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 318aa MW: 33537.7 Da PI: 8.4735

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.6	6.8e-32	78	183	2	109
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....kaaksaa 95 a++ + ++++h kv+gR+RRvR++a caar+F+L++eLG+ d++ti WLl a+pai ++tgt++ +a ++ +++ +++ ++ + + OWM79498.1 78 AKRPSNSKDRHMKVEGRGRRVRMPAACAARIFQLTRELGHRNDGETIKWLLDHAEPAIVKATGTGTVPAIAVsV-------GGALKIPtstpANPSGDV 169 5678899*********************************************************8888844421.......111111111112233333 PP TCP 96 kskksqksaasaln 109 ++kk+ ++ a +++ OWM79498.1 170 NRKKRGHKMAVNSD 183 44444444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MKSENQNQSV AAEEDDGVIN INKVDQRTGA EIVSDGRPDD PLKEESASSY LEPKGGGFFP 60 IGGPAQVFLA PETQRSVAKR PSNSKDRHMK VEGRGRRVRM PAACAARIFQ LTRELGHRND 120 GETIKWLLDH AEPAIVKATG TGTVPAIAVS VGGALKIPTS TPANPSGDVN RKKRGHKMAV 180 NSDFIDVGQA GAAPLAYSRG SVWPVLSPPS MSLVPQGVSA HPQFLPLAPV PAAAQPMFGV 240 MGRPISSFMA AMEGGVSSVM PPSSSSNAES TASPSSTSTN TDTSTTNTST TTTITTQLLR 300 DFSMEVYEKK ELQFFGSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	8e-48	TCP family protein