PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79528.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 270aa MW: 30293.7 Da PI: 6.3045

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v ++G g+W++++ g+ R +k+c++rw +yl OWM79528.1 21 KGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 68 678*******************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	74	119	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E+e ++ ++ lG++ W+ Ia++++ gRt++++k++w++yl OWM79528.1 74 RGMFTEQEEETILILHSSLGNK-WSQIAQRLP-GRTDNEVKNYWHSYL 119 789*****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MVCKSSSSDQ NIEKPKRKHR KGLWSPEEDQ RLRNYVLKHG HGCWSSVPIN AGLQRNGKSC 60 RLRWINYLRP GLKRGMFTEQ EEETILILHS SLGNKWSQIA QRLPGRTDNE VKNYWHSYLK 120 KKVAKAEEVR LQSRTDSEGQ ECSLASSESS ANQIPGYDSI QHAQNTLVDL QGQQSSLPKI 180 LFAEWLSLDN NAPGGIHIAD PSEMIGSTNS LNDHLNLDDC MFDNLLLSSG TTFCGDYNGS 240 DVSDGSASDI YSSQFDICSN FTLSNDLIYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	7e-64	MYB family protein