PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM79572.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 594aa    MW: 64025.2 Da    PI: 7.8469
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM79572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.19.2e-1052265942374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L+e+A+a+ +g++  a ++Larls  ++p+g+  qRl  y++ AL+ar++       ++ p++e     s++++ +++l++++sP++k+++++aN 
  OWM79572.1 226 KQSLVEAATAIYDGKNDVAAEILARLSSASNPRGSYEQRLMDYVLSALRARVFP----AENSPPVTEL---FSKDHVLSTQLLYDLSPCFKLGFMAANF 317
                 578**************************************************9....3333333333...499************************* PP

        GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 aIlea++++   +++H++Dfdi+qG+Q+++L++aL++R++g p  +RiT+v++  +g +e+l ++g++L+k+A+ +++ fef+v v +r ++l+ ++L 
  OWM79572.1 318 AILEAAAEQpaaNKLHVVDFDIGQGGQYVNLIHALSTRQAGRPsAMRITAVSD-FAGCEERLTAVGKQLSKVAADVRLGFEFRV-VNQRPAELTRDSLG 414
                 *******9999999*************************777769********.557**************************9.799*********** PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 + p+EalaVn++++l+r++desvs+e++rde+L+  k l+P+vv++veqe++ n+++F+ r+ ea+ yy al++s+e+++ r +++r+ vE+  l+r++
  OWM79572.1 415 CGPDEALAVNFAFKLYRIPDESVSIENPRDELLRRAKALEPRVVTLVEQEMNANTAPFVGRVNEAFGYYGALMESIESTVQRGTSDRARVEEG-LSRRV 512
                 *********************************************************************************************.***** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  n +aceg++r+er+e ++kWr+r+++aGF+p p+s +++++ k+ l+  +  + g++v+ee g + +gW +r+L+++SaWr
  OWM79572.1 513 ANSLACEGRDRVERCEVFGKWRARMGMAGFGPRPVSIQVVESLKARLSSGNrvNPGFTVKEEGGGVGFGWLSRTLTVASAWR 594
                 ********************************************99988776789**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    
MSSGFSGGGA PEFYAATGGI RPRSATAGPQ QQLYRAAQQQ FQGIFLDPSA SQIAQQPAPP  60
PLNLIGKRTL SEFQQNQALN NLLLRSVRPR TYLQRSPLEF SGALPAQRFG VPLLQQLRPQ  120
PINLANGGTN PTNPTPAPAP INQGVETETK MMNRLQELEK ALLDDDDNGD AASVITNANS  180
EWSEAIQSLI SPTQNPIASS SPSSSSSSSS PSSSVSVPSP AAIISKQSLV EAATAIYDGK  240
NDVAAEILAR LSSASNPRGS YEQRLMDYVL SALRARVFPA ENSPPVTELF SKDHVLSTQL  300
LYDLSPCFKL GFMAANFAIL EAAAEQPAAN KLHVVDFDIG QGGQYVNLIH ALSTRQAGRP  360
SAMRITAVSD FAGCEERLTA VGKQLSKVAA DVRLGFEFRV VNQRPAELTR DSLGCGPDEA  420
LAVNFAFKLY RIPDESVSIE NPRDELLRRA KALEPRVVTL VEQEMNANTA PFVGRVNEAF  480
GYYGALMESI ESTVQRGTSD RARVEEGLSR RVANSLACEG RDRVERCEVF GKWRARMGMA  540
GFGPRPVSIQ VVESLKARLS SGNRVNPGFT VKEEGGGVGF GWLSRTLTVA SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-145GRAS family protein