PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79768.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB_related

Protein Properties

Length: 473aa MW: 53919.1 Da PI: 5.8323

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.7e-10	91	136	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W + E + l v ++G ++W+ ++++ g++R++ c++rw++yl OWM79768.1 91 YWHPRENKTLRAFVSLHGARNWRWVSAESGLKRSPGACRNRWRDYL 136 6*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MGRKRRNIYI TEPAIAVNDG SCIDSWVPLD LLEEILLRLP VRSLLRCKAV CKSLYHLIKS 60 EQFLASYHAC WKNCYGEEYG LDKSFNWSGL YWHPRENKTL RAFVSLHGAR NWRWVSAESG 120 LKRSPGACRN RWRDYLDPGL VDPRPFSKEE AKKVVELHGL HCMKGHRWAL IARELPGRRW 180 PAYYTVVVAE LWGVYAGLEH LWQLGFGRVL VEVDSILVRV QVEATSDWNV IYRLELMSLV 240 SGSVPVSEEM GVEETKEVGE NSGTAAVEVK ADERVDGGGE NDTDDEAREE EDEEGSKLQL 300 GPRISLKQHL EKDKDDESLR RWKEKLLGSV DFDHIGESFE PEVKILSLAI ISPGRPNIIL 360 PVPENGNPNG LWFTLKEGSS YRLKFTFKVS NNIVSGLKYV NTVWKSVDST KEMLGTFSPE 420 LEPYTHMMHE ETTPSGILAR GSYSARSKFL DDDDKCYLEI NYTFAIQKDW ASS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MGRKRRNIYI TEPAIAVNDG SCIDSWVPLD LLEEILLRLP VRSLLRCKAV CKSLYHLIKS  60
EQFLASYHAC WKNCYGEEYG LDKSFNWSGL YWHPRENKTL RAFVSLHGAR NWRWVSAESG  120
LKRSPGACRN RWRDYLDPGL VDPRPFSKEE AKKVVELHGL HCMKGHRWAL IARELPGRRW  180
PAYYTVVVAE LWGVYAGLEH LWQLGFGRVL VEVDSILVRV QVEATSDWNV IYRLELMSLV  240
SGSVPVSEEM GVEETKEVGE NSGTAAVEVK ADERVDGGGE NDTDDEAREE EDEEGSKLQL  300
GPRISLKQHL EKDKDDESLR RWKEKLLGSV DFDHIGESFE PEVKILSLAI ISPGRPNIIL  360
PVPENGNPNG LWFTLKEGSS YRLKFTFKVS NNIVSGLKYV NTVWKSVDST KEMLGTFSPE  420
LEPYTHMMHE ETTPSGILAR GSYSARSKFL DDDDKCYLEI NYTFAIQKDW ASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26950.1	2e-16	MYB family protein