PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79870.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 362aa MW: 40446.3 Da PI: 6.4298

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W+++++ g+ R++k+c++rw +yl OWM79870.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	47.9	3e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ OWM79870.1 67 RGSFSQQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGHHSCCSKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SQQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKRLFMSH 120 PHDHHHHHQY VHAPPHPVSG FPHDHHPIAP NPSYYDEAHG GSFLSSLHSQ TNLILAAAAQ 180 QDQVMQRANA ATPMPSNLEL DEMSNNFSAA VGAITLNSLQ LPELYAPSCD NPLWSLQFPL 240 LHHQADPCNQ VPPDQMPVCV EGAHQIIADT GDTAYVDSLC TVVQGYDDEN YHSNITSSTV 300 LTMPKLCDMV MPISSSTSQE INPVSFLQNG FYHQDPLYMS QYEMDDYIDT VVSSLPPSSS 360 SS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGHHSCCSKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKRLFMSH  120
PHDHHHHHQY VHAPPHPVSG FPHDHHPIAP NPSYYDEAHG GSFLSSLHSQ TNLILAAAAQ  180
QDQVMQRANA ATPMPSNLEL DEMSNNFSAA VGAITLNSLQ LPELYAPSCD NPLWSLQFPL  240
LHHQADPCNQ VPPDQMPVCV EGAHQIIADT GDTAYVDSLC TVVQGYDDEN YHSNITSSTV  300
LTMPKLCDMV MPISSSTSQE INPVSFLQNG FYHQDPLYMS QYEMDDYIDT VVSSLPPSSS  360
SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	3e-79	MYB family protein