PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79898.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 290aa MW: 32438.2 Da PI: 5.2523

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.9e-07	18	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+ Ede+l ++v+++G ++R++k+c++rw++yl OWM79898.1 18 RGVWSSKEDEILTNYVNLHG------------LNRCAKSCRLRWLNYL 53 899***************............47**********97 PP
2	Myb_DNA-binding	47.7	3.5e-15	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++ +lG++ W++Ia +++ gRt++++k++w++ OWM79898.1 59 RGNISEDEEELIIRLHCLLGNR-WALIAGRLP-GRTDNEIKNYWNTI 103 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGRRRSHCCP KESTNVNRGV WSSKEDEILT NYVNLHGLNR CAKSCRLRWL NYLKPGIKRG 60 NISEDEEELI IRLHCLLGNR WALIAGRLPG RTDNEIKNYW NTILVKKSHK HPRTALRPKS 120 VPPNSLEEHF SPNNEDDAMN FDNNHSILNA RHEALIGLAD QADDGEKQKY GPGSGPGPGP 180 FTFSPTVAPE GTGNDDLGFM MDESYGSESL SGNLNEVVPE DFLNLSPSST SPGSGSLFSG 240 DDQAMMINKF ENEINNCSNT TIREPTLDVE LKKLASFLDL EDEWRELLKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-43	MYB family protein