PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79900.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 271aa MW: 29999.4 Da PI: 5.1143

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++++ +G g W+tI+++ g++R++k+c++rw++yl OWM79900.1 14 KGAWTEMEDRILKNYITAYGEGKWSTIPKKAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ OWM79900.1 67 RGNISKDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MGRSPSCSSE GLNKGAWTEM EDRILKNYIT AYGEGKWSTI PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SKDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT IAGKRVQGNP 120 SSPSTSRRTS SSGPKHTKRP HKKGSANQPE MTTDVQPCNT IESLEPESEK GIDPQAMDAN 180 GPQSTVDRDC ELGDFELDDG FLLDFLGLNN IDQEGDNGYS EIREGDNGKI SRPSSSLNSD 240 DALMSPELML CESDFQSIAS FLEGGELDSV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	6e-59	MYB family protein