PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79948.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 331aa MW: 36439.1 Da PI: 7.2844

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l+d+++++G+g W + ++ g++R++k+c++rw +yl OWM79948.1 14 KGPWDAEEDKKLADYIQKHGPGGWISLPKLAGLNRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.9	4.7e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l OWM79948.1 67 RGSFTPEEEQTILKLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MGRSPSSAKN GLKKGPWDAE EDKKLADYIQ KHGPGGWISL PKLAGLNRCG KSCRLRWINY 60 LRPDIKRGSF TPEEEQTILK LHAVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKRLIRMG 120 YDPMTHEPRA DLTACLRLLA VNNLSNFLNH NTLLDVNAIK LQFLKQILQS TDVGLPNLVS 180 SISSSPAPDL LPKENPILNS LSQLENQSSF SLGATIPQPL HHPISTTLLS NPTLQSDPQV 240 PFPPSFQTVP FDGEVGQFSA FSQGDNLTDS ISQWDFQSVT NFVPSIAKET TTTSISNHGD 300 VTSSSSLIQC GGDGGSSSPW REIFFDDSIL Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	9e-80	MYB family protein