PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM79958.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 301aa MW: 33372.8 Da PI: 8.708

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM79958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	114	133	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ OWM79958.1 114 FSCQLCFKTFNRYNNLQMHM 133 89*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MASSTSAPLN INSTSPKESE PLEPLPLISC LLRSTSSNHI ENPPNYASCK EASAEGGDDD 60 VTVALHIGLP SFSSGVSRDQ PETLGADENK TAVTAEKRYW IPTPEQILIG FTHFSCQLCF 120 KTFNRYNNLQ MHMWGHGSQY RKGPESLRGT QPRAMLGIPC YCCNDGCKNN INHPRAKAFK 180 DFRTLQTHYK RKHGMKPFAC QKCGKLLAVK GDWRTHEKNC GKRWLCLCGS DFKHKRSLKD 240 HVRAFGSGHG PFPATLFGEV PAVENGTTSS DVYDDLKSNT SIAGSRTIGF PHELSFTNKY 300 I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-112	C2H2 family protein