PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM80033.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 309aa    MW: 35286.1 Da    PI: 5.7578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM80033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.12.7e-202875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEdell+++v+ +G g+W+++a+  g++Rt+k+c++rw++yl
       OWM80033.1 28 KGPWTDEEDELLINYVRAHGEGRWNSVAHFAGLKRTGKSCRLRWLNYL 75
                     79********************************************97 PP
2Myb_DNA-binding47.54.2e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++ ++d++ ++G++ W++Ia++++ gRt++++k++w++
       OWM80033.1  81 RGNITLQEQLMILDLHSRWGNR-WSKIAKYLP-GRTDNEIKNYWRT 124
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MEIHISGSAN GSGAPVIGEE LGAGDVRKGP WTDEEDELLI NYVRAHGEGR WNSVAHFAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLQEQL MILDLHSRWG NRWSKIAKYL PGRTDNEIKN  120
YWRTRVQKQA KQLKCDVNSQ QFRDAMRYEW IPRMMERIRA SSGATLGQHP SPMDSMNHWT  180
NIQVLQSGNH MRSQSHDPTV MPEMSSMTSD SSDFQHSPVS DFSEYYYKPP SNVHTQTQQG  240
PTANDVNGCS GLTNVVDQFD MDINHTFEES NSLWLLGGGD QSLLSDDFWN EENIGFLQQQ  300
LSDEDICSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.17e-79MYB family protein